SMTL ID : 3d7i.1

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in oxygen detoxification (1591455) from METHANOCOCCUS JANNASCHII at 1.75 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.84 Chain D: K.37 Chain F: Y.19, P.20, D.21, L.22 6 PLIP interactions: 3 interactions with chain F, 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: F:D.21, F:D.21, F:L.22 Water bridges: D:K.37 Salt bridges: D:K.37, A:R.84 SO4.2: 6 residues within 4Å: Chain A: Y.19, P.20, D.21, L.22 Chain B: R.84 Chain C: K.37 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.21, A:D.21, A:L.22 Salt bridges: B:R.84 SO4.3: 5 residues within 4Å: Chain B: Y.19, P.20, D.21, L.22 Chain E: K.37 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain E, 2 interactions with chain F Hydrogen bonds: B:D.21, B:L.22 Water bridges: E:K.37, F:R.84, F:R.84 Salt bridges: E:K.37 SO4.5: 6 residues within 4Å: Chain A: K.37 Chain C: Y.19, P.20, D.21, L.22 Chain D: R.84 7 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 3 interactions with chain D Water bridges: A:K.37, D:R.84, D:R.84 Salt bridges: A:K.37, D:R.84 Hydrogen bonds: C:D.21, C:L.22 SO4.6: 6 residues within 4Å: Chain D: Y.19, P.20, D.21, L.22 Chain E: R.84 Chain F: K.37 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:D.21, D:D.21, D:D.21, D:L.22 Salt bridges: E:R.84 SO4.7: 5 residues within 4Å: Chain B: K.37 Chain E: Y.19, P.20, D.21, L.22 7 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 3 interactions with chain E Water bridges: C:R.84, C:R.84, B:K.37 Salt bridges: B:K.37 Hydrogen bonds: E:D.21, E:D.21, E:L.22

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 6 residues within 4Å: Chain C: T.75, K.76, E.77 Chain E: V.14, A.18, Y.19 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:T.75, C:K.76, C:E.77, E:Y.19 PG4.8: 6 residues within 4Å: Chain B: V.14, A.18, Y.19 Chain F: T.75, K.76, E.77 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain F Water bridges: B:Y.19, F:T.75 Hydrogen bonds: F:T.75, F:K.76, F:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in oxygen detoxification (1591455) from METHANOCOCCUS JANNASCHII at 1.75 A resolution. To be published

Release Date

2008-07-15

Peptides

carboxymuconolactone decarboxylase family protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

carboxymuconolactone decarboxylase family protein