SMTL ID : 3d7w.1

Mistletoe Lectin I in Complex with Zeatin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: Q.92, W.94, N.96, Y.126, L.228 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.94 NAG-NAG.2: 8 residues within 4Å: Chain A: F.214, N.215, P.217 Chain B: I.11, V.12, N.44, L.49, N.136 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.49 Hydrogen bonds: B:N.44

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: D.91, N.112, D.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.91 NAG.8: 3 residues within 4Å: Chain B: D.27, F.29, N.61 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.29 Hydrogen bonds: B:N.61, B:N.61 Water bridges: B:F.29

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: E.119, H.124, R.125, D.126 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.119, A:E.119, A:R.125, A:D.126, A:D.126 Salt bridges: A:H.124, A:R.125 SO4.5: 5 residues within 4Å: Chain A: G.31, S.32, F.33 Chain B: D.2, V.3 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.2, B:D.2, B:V.3, A:G.31, A:F.33

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: P.171, W.174, R.175, Q.178 Chain B: Y.146, D.150, V.262 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.171, A:R.175, A:R.175, B:D.150 GOL.7: 8 residues within 4Å: Chain A: L.75, Y.76, V.77, G.113, Y.115, I.160, S.164, R.168 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.77, A:V.77, A:S.164, A:R.168, A:R.168 GOL.11: 5 residues within 4Å: Chain B: M.77, F.79, T.83, A.84, V.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.85 GOL.12: 8 residues within 4Å: Chain B: D.23, V.24, R.25, D.26, Q.36, W.38, K.41, N.47 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.26, B:D.26, B:D.27, B:Q.36, B:K.41, B:K.41, B:N.47

1 x ZEA: (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol(Non-covalent)

ZEA.9: 11 residues within 4Å: Chain A: R.234, D.235 Chain B: L.133, R.141, T.143, L.176, Y.177, G.178, P.261, P.263 Ligands: ZEZ.10 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.235, B:R.141, B:R.141 Hydrophobic interactions: B:R.141 Water bridges: B:P.261

1 x ZEZ: (2Z)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol(Non-covalent)

ZEZ.10: 11 residues within 4Å: Chain A: R.234, D.235 Chain B: L.133, R.141, T.143, L.176, Y.177, G.178, P.261, P.263 Ligands: ZEA.9 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.235, B:R.141 Hydrophobic interactions: B:L.133, B:R.141 Water bridges: B:P.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, A. et al., Structure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin. Biochim.Biophys.Acta (2008)

Release Date

2008-06-17

Peptides

Beta-galactoside-specific lectin 1: A
Beta-galactoside-specific lectin 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-galactoside-specific lectin 1

Beta-galactoside-specific lectin 1