SMTL ID : 3daa.1

CRYSTALLOGRAPHIC STRUCTURE OF D-AMINO ACID AMINOTRANSFERASE INACTIVATED BY PYRIDOXYL-D-ALANINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PDD: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE(Non-covalent)

PDD.1: 21 residues within 4Å: Chain A: Y.31, V.33, H.47, R.50, R.138, K.145, E.177, G.178, S.179, S.180, S.181, N.182, L.201, G.203, I.204, T.205, T.239, S.240, T.241 Chain B: R.98, H.100 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.33, A:L.201 Hydrogen bonds: A:Y.31, A:K.145, A:I.204, A:T.205, A:T.241, A:T.241 Water bridges: A:R.50, A:R.50, A:S.179, A:R.206 Salt bridges: A:H.47, A:R.50, A:K.145, A:K.145, B:R.98, B:H.100 PDD.2: 21 residues within 4Å: Chain A: R.98, H.100 Chain B: Y.31, V.33, H.47, R.50, R.138, K.145, E.177, G.178, S.179, S.180, S.181, N.182, L.201, G.203, I.204, T.205, T.239, S.240, T.241 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.33, B:L.201 Hydrogen bonds: B:K.145, B:S.179, B:I.204, B:T.205, B:T.205, B:T.241, B:T.241 Water bridges: B:Y.31, B:E.32, B:R.50, B:R.206 Salt bridges: B:H.47, B:R.50, B:K.145, B:K.145, A:R.98, A:H.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peisach, D. et al., Crystallographic study of steps along the reaction pathway of D-amino acid aminotransferase. Biochemistry (1998)

Release Date

1998-04-29

Peptides

D-AMINO ACID AMINOTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-AMINO ACID AMINOTRANSFERASE

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