SMTL ID : 3daq.1 (1 other biounit)

Crystal structure of dihydrodipicolinate synthase from methicillin-resistant Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: T.12, P.14, H.28, T.256, F.261 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: T.12, P.14, H.28, T.256, F.261 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.134, V.136, R.139, K.162, A.164, G.188, N.248 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.139, A:K.162, A:N.248 Water bridges: A:S.138, A:S.138, A:S.138, A:R.139 GOL.3: 11 residues within 4Å: Chain A: N.43, G.44, T.45, S.49, G.77, T.78, G.79, M.102, L.103, I.104 Chain B: Y.108 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.49, A:S.49, A:G.79, A:M.102, A:I.104, B:Y.108, B:Y.108 Water bridges: A:T.45 GOL.5: 7 residues within 4Å: Chain B: Y.134, V.136, R.139, K.162, A.164, G.188, N.248 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.139, B:K.162, B:K.162, B:N.248 Water bridges: B:S.138 GOL.6: 12 residues within 4Å: Chain A: Y.108 Chain B: N.43, G.44, T.45, S.49, G.77, T.78, G.79, M.102, L.103, I.104, Y.134 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.49, B:S.49, B:G.79, B:M.102, B:I.104, A:Y.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burgess, B.R. et al., Structure and evolution of a novel dimeric enzyme from a clinically-important bacterial pathogen. J.Biol.Chem. (2008)

Release Date

2008-08-05

Peptides

Dihydrodipicolinate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydrodipicolinate synthase

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