SMTL ID : 3dc5.1

Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.27, H.75, D.156, H.160 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.27, A:H.75, A:D.156, A:H.160, H2O.1 MN.3: 4 residues within 4Å: Chain B: H.27, H.75, D.156, H.160 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.27, B:H.75, B:D.156, B:H.160, H2O.8 MN.4: 4 residues within 4Å: Chain C: H.27, H.75, D.156, H.160 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.27, C:H.75, C:D.156, C:H.160, H2O.17 MN.6: 4 residues within 4Å: Chain D: H.27, H.75, D.156, H.160 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.27, D:H.75, D:D.156, D:H.160, H2O.24

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 4 residues within 4Å: Chain A: N.168, V.169, P.171 Chain C: T.34 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Water bridges: C:T.34 Hydrogen bonds: A:N.168 MLI.5: 4 residues within 4Å: Chain A: T.34 Chain C: N.168, V.169, P.171 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Water bridges: A:T.34, A:T.34, A:T.34, A:T.34 Hydrogen bonds: C:N.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trinh, C.H. et al., Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from Caenorhabditis elegans. Acta Crystallogr.,Sect.F (2008)

Release Date

2009-06-09

Peptides

Superoxide dismutase [Mn] 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
A

D
C

Superoxide dismutase [Mn] 2

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