SMTL ID : 3dc6.1

Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.27, H.75, D.159, H.163 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.27, A:H.75, A:D.159, A:H.163, H2O.1 MN.4: 4 residues within 4Å: Chain B: H.27, H.75, D.159, H.163 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.27, B:H.75, B:D.159, B:H.163, H2O.12 MN.6: 4 residues within 4Å: Chain C: H.27, H.75, D.159, H.163 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.27, C:H.75, C:D.159, C:H.163, H2O.18 MN.9: 4 residues within 4Å: Chain D: H.27, H.75, D.159, H.163 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.27, D:H.75, D:D.159, D:H.163, H2O.29

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.12, Q.25, Q.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.25, A:Q.29, A:Q.29 SO4.3: 3 residues within 4Å: Chain A: H.3, S.4, H.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4 Salt bridges: A:H.3, A:H.72 SO4.5: 3 residues within 4Å: Chain B: H.3, S.4, H.72 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.4 Water bridges: B:K.2 Salt bridges: B:H.3, B:H.72 SO4.7: 3 residues within 4Å: Chain C: Y.12, Q.25, Q.29 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.25, C:Q.29, C:Q.29 SO4.8: 3 residues within 4Å: Chain C: H.3, S.4, H.72 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.4 Salt bridges: C:H.3, C:H.72 SO4.10: 3 residues within 4Å: Chain D: H.3, S.4, H.72 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.4 Water bridges: D:K.2 Salt bridges: D:H.3, D:H.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trinh, C.H. et al., Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from Caenorhabditis elegans. Acta Crystallogr.,Sect.F (2008)

Release Date

2009-06-09

Peptides

Superoxide dismutase [Mn] 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
A

D
C

Superoxide dismutase [Mn] 1