SMTL ID : 3dcm.1

Crystal structure of the Thermotoga maritima SPOUT family RNA-methyltransferase protein Tm1570 in complex with S-adenosyl-L-methionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: T.111, S.112, A.113, L.140, G.141, T.142, G.143, W.144, G.145, P.160, I.161, N.168, L.170, S.171, V.172, R.173, A.175 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.111, A:T.111, A:G.141, A:I.161, A:I.161, A:L.170, A:V.172 Water bridges: A:L.146, A:R.173, A:R.173, A:R.173 Salt bridges: A:R.173 SAM.2: 17 residues within 4Å: Chain B: T.111, S.112, A.113, L.140, G.141, T.142, G.143, W.144, G.145, P.160, I.161, N.168, L.170, S.171, V.172, R.173, A.175 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.111, B:G.141, B:I.161, B:I.161, B:L.170, B:V.172 Water bridges: B:L.146, B:R.173, B:R.173, B:R.173 Salt bridges: B:R.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D.J. et al., Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine. Proteins (2009)

Release Date

2008-12-09

Peptides

Uncharacterized protein TM_1570: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Uncharacterized protein TM_1570