SMTL ID : 3dd6.1

Crystal structure of Rph, an exoribonuclease from Bacillus anthracis at 1.7 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.2 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.96, R.136 Chain F: R.102 Ligands: SO4.1 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.4: 7 residues within 4Å: Chain A: K.66, V.112, D.113, L.114, E.115, K.166 Chain F: E.217 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.16, R.22, N.187 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.7 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: R.96, R.136 Chain E: R.102 Ligands: SO4.6 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain B: K.66, V.112, D.113, L.114, E.115, K.166 Chain E: E.217 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: R.16, R.22, N.187 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain C: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.12 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: R.96, R.136 Chain D: R.102 Ligands: SO4.11 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain C: K.66, V.112, D.113, L.114, E.115, K.166 Chain D: E.217 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain C: R.16, R.22, N.187 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain D: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.17 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: R.102 Chain D: R.96, R.136 Ligands: SO4.16 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain D: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.19: 7 residues within 4Å: Chain C: E.217 Chain D: K.66, V.112, D.113, L.114, E.115, K.166 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: R.16, R.22, N.187 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain E: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.22 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: R.102 Chain E: R.96, R.136 Ligands: SO4.21 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain E: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain B: E.217 Chain E: K.66, V.112, D.113, L.114, E.115, K.166 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain E: R.16, R.22, N.187 Ligand excluded by PLIP SO4.26: 6 residues within 4Å: Chain F: R.96, G.133, G.134, T.135, R.136 Ligands: SO4.27 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain A: R.102 Chain F: R.96, R.136 Ligands: SO4.26 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain F: W.68, T.70, R.102, R.109 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain A: E.217 Chain F: K.66, V.112, D.113, L.114, E.115, K.166 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain F: R.16, R.22, N.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rawlings, A.E. et al., The structure of Rph, an exoribonuclease from Bacillus anthracis, at 1.7 A resolution. Acta Crystallogr.,Sect.F (2009)

Release Date

2009-02-10

Peptides

Ribonuclease PH: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Ribonuclease PH