SMTL ID : 3ddh.1

The structure of a putative haloacid dehalogenase-like family hydrolase from Bacteroides thetaiotaomicron VPI-5482

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.14, D.16, T.18, N.182 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.14, A:D.16, H2O.1, H2O.1, H2O.4 MG.3: 7 residues within 4Å: Chain A: Y.63, G.64, A.65, K.66, A.67, D.132 Chain B: K.66 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.132, A:D.132 MG.5: 4 residues within 4Å: Chain B: D.14, D.16, T.18, N.182 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.14, B:D.16, H2O.10, H2O.11, H2O.11 MG.6: 1 residues within 4Å: Chain B: K.161 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: D.14, T.129, K.130, K.158 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: D.14, T.129, K.130, K.158 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: E.54, G.62, Y.63, G.64, F.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.54, A:G.64 Water bridges: A:A.67 GOL.8: 6 residues within 4Å: Chain B: E.54, M.55, G.62, Y.63, G.64, F.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.64 Water bridges: B:A.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a putative haloacid dehalogenase-like family hydrolase from Bacteroides thetaiotaomicron VPI-5482. TO BE PUBLISHED

Release Date

2008-09-30

Peptides

Putative haloacid dehalogenase-like family hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative haloacid dehalogenase-like family hydrolase