SMTL ID : 3ddu.1

Prolyl Oligopeptidase with GSK552

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: Y.472, I.477, S.553, H.679 Ligands: 552.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.477 Hydrogen bonds: A:Y.472, A:Y.472, A:S.553, A:N.554 Salt bridges: A:H.679 ACT.2: 6 residues within 4Å: Chain A: F.400, F.452, V.454, L.498, A.499, V.500 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.400, A:V.454, A:L.498, A:V.500 Water bridges: A:A.499 ACT.3: 5 residues within 4Å: Chain A: Y.5, P.6, Q.656, Y.657, R.661 No protein-ligand interaction detected (PLIP) ACT.4: 6 residues within 4Å: Chain A: M.66, Y.70, S.484, V.485, S.486, V.688 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.688 Hydrogen bonds: A:V.485, A:S.486, A:S.486 Water bridges: A:S.484 ACT.5: 8 residues within 4Å: Chain A: R.65, L.69, I.429, Y.434, L.488, I.489, R.492, H.493 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.69, A:I.489, A:R.492 Hydrogen bonds: A:Y.434 Water bridges: A:R.65, A:R.492, A:H.493 Salt bridges: A:H.493

1 x 552: (6S)-1-chloro-3-[(4-fluorobenzyl)oxy]-6-(pyrrolidin-1-ylcarbonyl)pyrrolo[1,2-a]pyrazin-4(6H)-one(Non-covalent)

552.6: 17 residues within 4Å: Chain A: F.172, M.234, R.251, G.253, C.254, Y.472, F.475, S.553, N.554, V.579, I.590, A.593, W.594, Y.598, R.642, V.643 Ligands: ACT.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.475, A:N.554, A:V.579, A:A.593, A:W.594, A:V.643 Hydrogen bonds: A:R.642 pi-Cation interactions: A:R.642

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: A.225, E.226, F.227, W.261, I.275, W.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haffner, C.D. et al., Pyrrolidinyl pyridone and pyrazinone analogues as potent inhibitors of prolyl oligopeptidase (POP). Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-08-19

Peptides

Prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl endopeptidase