SMTL ID : 3deb.1

Crystal Structure of apo form (Zinc removed) of the Botulinum Neurotoxin Type C Light Chain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.187, P.188, E.189, E.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.289

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: S.155 Ligands: ACT.3 5 PLIP interactions: 4 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: H2O.2, H2O.6, H2O.15, H2O.15, ACT.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: D.152, F.153, S.155 Ligands: CA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.153 Water bridges: A:D.150, A:D.152

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 5 residues within 4Å: Chain A: N.139, N.141, T.142, D.148, V.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.139 Water bridges: A:N.141, A:N.198 FMT.5: 5 residues within 4Å: Chain A: F.293, T.297, I.394, Y.395, L.396 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.297, A:Y.395, A:L.396 FMT.6: 3 residues within 4Å: Chain A: S.191, T.192, F.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.192 Water bridges: A:Q.203, A:Q.203 FMT.7: 5 residues within 4Å: Chain A: N.47, L.49, E.54, D.68, R.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.47, A:R.69, A:R.69 Water bridges: A:K.103 FMT.8: 5 residues within 4Å: Chain A: T.105, E.109, N.406, I.407, L.408 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.109, A:I.407, A:L.408 FMT.9: 5 residues within 4Å: Chain A: Y.91, R.217, T.404, V.444, N.445 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:R.217, A:R.217, A:N.445 FMT.10: 1 residues within 4Å: Chain A: D.228 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.230, A:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rawat, R. et al., Crystal Structure of apo form (Zinc removed) of the Botulinum Neurotoxin Type C Light Chain. To be Published

Release Date

2009-04-07

Peptides

Botulinum neurotoxin C1 light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Botulinum neurotoxin C1 light chain