SMTL ID : 3dew.1

The structure of a putative TetR family transcriptional regulator from Geobacter sulfurreducens PCA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.78, P.80, S.134 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: G.78, P.80, S.134 Ligand excluded by PLIP

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: A.57, P.114, C.115, A.118, I.119 No protein-ligand interaction detected (PLIP) BME.8: 5 residues within 4Å: Chain B: A.57, P.114, C.115, A.118, I.119 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: F.164, T.175, S.176, Q.181, L.185 Chain B: N.152 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.175, A:S.176, A:Q.181, B:N.152 EDO.4: 3 residues within 4Å: Chain A: G.142, R.146 Chain B: A.199 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.146 EDO.5: 3 residues within 4Å: Chain A: E.183, E.184, R.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.184, A:R.187, A:R.187 Water bridges: A:E.183, A:E.184 EDO.9: 6 residues within 4Å: Chain A: N.152 Chain B: F.164, T.175, S.176, Q.181, L.185 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.152, B:T.175, B:S.176, B:Q.181 Water bridges: B:T.175 EDO.10: 3 residues within 4Å: Chain A: A.199 Chain B: G.142, R.146 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.146 EDO.11: 3 residues within 4Å: Chain B: E.183, E.184, R.187 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.184, B:E.184, B:R.187, B:R.187 Water bridges: B:E.183, B:E.184

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 9 residues within 4Å: Chain A: F.67, Y.87, T.91, R.94, Y.105, V.127, I.128, N.162 Chain B: Y.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.127, A:I.128 Hydrogen bonds: A:Y.87, A:Y.87, A:T.91, A:Y.105, A:N.162 Water bridges: A:R.94, A:R.94 Salt bridges: A:R.94 ACY.12: 9 residues within 4Å: Chain A: Y.163 Chain B: F.67, Y.87, T.91, R.94, Y.105, V.127, I.128, N.162 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.127, B:I.128 Hydrogen bonds: B:Y.87, B:N.162, A:Y.163 Water bridges: B:R.94, B:R.94 Salt bridges: B:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a putative TetR family transcriptional regulator from Geobacter sulfurreducens PCA. TO BE PUBLISHED

Release Date

2008-09-30

Peptides

Transcriptional regulator, TetR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator, TetR family