SMTL ID : 3df9.1

Crystal structure of E. coli MTA/SAH nucleosidase in complex with BnT-DADMeImmA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x DF9: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(benzylsulfanyl)methyl]pyrrolidin-3-ol(Non-covalent)

DF9.1: 22 residues within 4Å: Chain A: A.18, M.19, E.22, I.60, S.86, A.87, G.88, A.160, F.161, I.162, V.181, E.182, M.183, E.184, S.206, D.207, A.209, F.217 Chain B: V.112, F.115, Y.117, P.123 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.60, A:F.217, B:V.112, B:Y.117, B:P.123 Hydrogen bonds: A:I.162, A:E.184, A:D.207, A:D.207 Water bridges: A:M.183, A:R.203, A:R.203, A:R.203 Salt bridges: A:E.22, A:E.184 pi-Stacking: B:F.115 DF9.2: 21 residues within 4Å: Chain A: V.112, F.115, Y.117, P.123 Chain B: A.18, M.19, I.60, S.86, A.87, G.88, A.160, F.161, I.162, V.181, E.182, M.183, E.184, S.206, D.207, A.209, F.217 16 PLIP interactions: 4 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:V.112, A:Y.117, A:P.123, B:I.60, B:F.217 pi-Stacking: A:F.115 Hydrogen bonds: B:I.162, B:E.184, B:D.207, B:D.207 Water bridges: B:M.183, B:R.203, B:R.203, B:R.203 Salt bridges: B:E.22, B:E.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siu, K.K. et al., Structure of Staphylococcus aureus 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. Acta Crystallogr.,Sect.F (2008)

Release Date

2009-03-17

Peptides

MTA/SAH nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MTA/SAH nucleosidase

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