SMTL ID : 3dgr.1

Crystal structure of human NAMPT complexed with ADP analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x A12: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

A12.1: 13 residues within 4Å: Chain A: F.193, R.196, A.244, R.311, I.351, G.353, S.382, G.383 Chain B: Y.18, R.40, R.392, S.398, K.400 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:R.196, A:R.311, B:R.40, B:R.392, B:R.392, B:K.400 Water bridges: A:A.245, A:S.275, A:S.275, A:G.353, B:E.149, B:F.399, B:K.415 pi-Stacking: A:F.193, A:F.193 pi-Cation interactions: A:R.311, A:R.311 A12.2: 13 residues within 4Å: Chain A: Y.18, R.40, E.149, R.392, S.398, K.400 Chain B: F.193, R.196, A.244, R.311, I.351, G.353, G.383 18 PLIP interactions: 7 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:R.40, A:R.392, A:R.392, A:S.398, A:K.400, B:R.196, B:R.311 Water bridges: A:C.397, A:F.399, B:H.247, B:S.275, B:S.275, B:R.311, B:G.353 pi-Stacking: B:F.193, B:F.193 pi-Cation interactions: B:R.311, B:R.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burgos, E.S. et al., A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-08-18

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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