SMTL ID : 3dhq.1

Crystal structure of Staphylococcal nuclease variant Delta+PHS A90R at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.21, R.35, D.40, T.41, E.43 Ligands: THP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.40, A:T.41, H2O.2

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.2: 13 residues within 4Å: Chain A: R.35, L.36, L.37, D.40, Q.74, D.77, K.78, Y.79, R.81, L.83, Y.107, Y.109 Ligands: CA.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.35, A:L.83, A:Y.107 Hydrogen bonds: A:R.81 Water bridges: A:R.35, A:E.43, A:K.78 Salt bridges: A:R.35, A:K.78, A:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harms, M.J. et al., Arginine residues at internal positions in a protein are always charged. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2009-01-06

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease