SMTL ID : 3di4.1

Crystal structure of a duf1989 family protein (spo0365) from silicibacter pomeroyi dss-3 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.81, C.151, C.168, C.238, P.239 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.151, A:C.168, A:C.238, H2O.1 ZN.5: 5 residues within 4Å: Chain B: D.81, C.151, C.168, C.238, P.239 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.151, B:C.168, B:C.238, H2O.15

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: T.149, R.150 Chain B: K.98 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: G.162, H.163 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: G.162 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: R.56, C.254 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: T.130, P.219, G.220, D.221, Y.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.221

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 8 residues within 4Å: Chain A: Y.25, K.98, A.101 Chain B: G.148, T.149, R.150, C.151, Y.210 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.25, B:T.149, B:R.150 Water bridges: A:A.101, B:C.151, B:N.196 Salt bridges: A:K.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function (DUF1989) (YP_165628.1) from SILICIBACTER POMEROYI DSS-3 at 1.60 A resolution. To be published

Release Date

2008-07-01

Peptides

Uncharacterized Protein DUF1989: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized Protein DUF1989