SMTL ID : 3div.1

Crystal structure of laccase from Cerrena maxima at 1.76A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: G.215, N.217, Q.252, V.297 Ligands: MAN.4 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 11 residues within 4Å: Chain A: F.20, R.22, Q.23, N.54, M.57, H.153, T.154, A.155, L.158 Ligands: MAN-MAN.3, MAN.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.22, A:A.155 Hydrogen bonds: A:A.155 Water bridges: A:H.153, A:T.154

1 x MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.3: 4 residues within 4Å: Chain A: A.14, F.20, S.21 Ligands: NAG-NAG-BMA.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.21 Water bridges: A:S.21, A:Q.23

2 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.4: 1 residues within 4Å: Ligands: NAG-NAG.1 No protein-ligand interaction detected (PLIP) MAN.5: 1 residues within 4Å: Ligands: NAG-NAG-BMA.2 No protein-ligand interaction detected (PLIP)

4 x CU: COPPER (II) ION(Non-covalent)

CU.6: 4 residues within 4Å: Chain A: H.111, H.398, H.400, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.452, H2O.21 CU.7: 5 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.454 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.454, H2O.21 CU.8: 4 residues within 4Å: Chain A: H.64, H.66, H.398, H.400 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, H2O.18 CU.9: 5 residues within 4Å: Chain A: H.395, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.453, A:H.458

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.10: 4 residues within 4Å: Chain A: N.333, S.335, N.336, F.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.333, A:S.335 NAG.11: 6 residues within 4Å: Chain A: S.319, N.327, S.383, P.385, N.436 Ligands: NAG.12 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.385 Hydrogen bonds: A:S.319, A:S.383, A:N.436 Water bridges: A:R.408, A:Y.415 NAG.12: 3 residues within 4Å: Chain A: A.325, N.327 Ligands: NAG.11 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyashenko, A.V. et al., Crystal Structure of laccase from Cerrena maxima at 1.76A resolution. To be Published

Release Date

2009-06-23

Peptides

LACCASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LACCASE