SMTL ID : 3djg.1

Catalytic cycle of human glutathione reductase near 1 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: I.25, G.26, G.27, G.28, S.29, G.30, V.48, E.49, S.50, H.51, K.52, G.55, T.56, C.57, V.60, G.61, C.62, K.65, G.127, H.128, A.129, A.154, T.155, G.156, S.176, I.197, R.290, N.293, L.297, G.329, D.330, L.336, L.337, T.338, P.339, F.371 Chain B: H.466, P.467 Ligands: NDP.2 30 PLIP interactions: 27 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.56 Hydrogen bonds: A:G.27, A:S.29, A:G.30, A:S.50, A:T.56, A:C.57, A:K.65, A:A.129, A:A.129, A:D.330, A:L.336, A:T.338, A:T.338, A:T.338, B:H.466 Water bridges: A:G.28, A:G.28, A:S.50, A:H.51, A:K.52, A:G.55, A:T.56, A:T.56, A:H.128, A:G.156, A:V.331, A:A.341, B:H.466, B:H.466 FAD.3: 39 residues within 4Å: Chain A: H.466, P.467 Chain B: I.25, G.26, G.27, G.28, S.29, G.30, V.48, E.49, S.50, H.51, K.52, G.55, T.56, C.57, V.60, G.61, C.62, K.65, G.127, H.128, A.129, A.154, T.155, G.156, S.176, I.197, R.290, N.293, L.297, G.329, D.330, L.336, L.337, T.338, P.339, F.371 Ligands: NDP.4 30 PLIP interactions: 27 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.56 Hydrogen bonds: B:G.27, B:S.29, B:G.30, B:S.50, B:T.56, B:T.56, B:C.57, B:K.65, B:A.129, B:A.129, B:D.330, B:L.336, B:T.338, B:T.338, A:H.466 Water bridges: B:G.28, B:G.28, B:S.50, B:S.50, B:H.51, B:K.52, B:G.55, B:G.156, B:G.157, B:D.330, B:V.331, B:A.341, A:H.466, A:H.466

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 20 residues within 4Å: Chain A: K.65, V.192, G.193, A.194, G.195, Y.196, I.197, E.200, R.217, H.218, R.223, A.287, I.288, G.289, R.290, L.336, L.337, V.369, F.371 Ligands: FAD.1 30 PLIP interactions: 29 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.196, A:Y.196, A:I.197 Hydrogen bonds: A:K.65, A:A.194, A:G.195, A:Y.196, A:I.197, A:E.200, A:R.217, A:G.289, A:L.336 Water bridges: A:Q.166, A:Y.196, A:Y.196, A:A.198, A:R.217, A:R.217, A:R.217, A:R.217, A:H.218, A:K.220, A:Q.249, A:I.288, B:H.466 Salt bridges: A:R.217, A:H.218, A:R.223 pi-Cation interactions: A:R.217, A:R.217 NDP.4: 20 residues within 4Å: Chain B: K.65, V.192, G.193, A.194, G.195, Y.196, I.197, E.200, R.217, H.218, R.223, A.287, I.288, G.289, R.290, L.336, L.337, V.369, F.371 Ligands: FAD.3 31 PLIP interactions: 1 interactions with chain A, 30 interactions with chain B Water bridges: A:H.466, B:Q.166, B:Y.196, B:A.198, B:R.217, B:R.217, B:R.217, B:R.217, B:R.217, B:R.217, B:H.218, B:K.220, B:Q.249, B:I.288 Hydrophobic interactions: B:Y.196, B:Y.196, B:I.197 Hydrogen bonds: B:K.65, B:A.194, B:G.195, B:Y.196, B:I.197, B:E.200, B:G.289, B:L.336, B:T.368 Salt bridges: B:R.217, B:H.218, B:R.223 pi-Cation interactions: B:R.217, B:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berkholz, D.S. et al., Catalytic cycle of human glutathione reductase near 1 A resolution. J.Mol.Biol. (2008)

Release Date

2008-08-05

Peptides

Glutathione reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Glutathione reductase