SMTL ID : 3dkp.1

Human DEAD-box RNA-helicase DDX52, conserved domain I in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.182 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: F.49, M.51, P.52, T.53, Q.56, P.74, T.75, G.76, S.77, G.78, K.79, T.80, L.81 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:M.51, A:T.53, A:Q.56, A:P.74, A:G.76, A:S.77, A:G.78, A:K.79, A:T.80, A:T.80, A:E.117 Water bridges: A:M.51, A:T.75, A:K.79, A:T.80, A:L.81, A:E.117, A:E.183 Salt bridges: A:K.79 ADP.3: 4 residues within 4Å: Chain A: R.108, H.133, K.134, R.159 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.134 Water bridges: A:K.134, A:K.134 Salt bridges: A:R.108, A:H.133, A:H.133, A:K.134, A:K.134, A:R.159

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: T.53, P.54, G.76, S.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutz, P. et al., Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One (2010)

Release Date

2008-08-12

Peptides

Probable ATP-dependent RNA helicase DDX52: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP-dependent RNA helicase DDX52