SMTL ID : 3dky.1

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-hexamer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.39, D.42, H.55, H.57, H.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.39, A:D.42, A:H.55, A:H.57 MN.2: 4 residues within 4Å: Chain B: H.39, D.42, H.55, H.57 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.39, B:D.42, B:H.55, B:H.57 MN.3: 5 residues within 4Å: Chain C: H.39, D.42, H.55, H.57, H.102 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.39, C:D.42, C:H.55, C:H.57 MN.4: 5 residues within 4Å: Chain F: H.39, D.42, H.55, H.57, H.102 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.39, F:D.42, F:H.55, F:H.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boer, D.R. et al., Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains. Embo J. (2009)

Release Date

2009-06-30

Peptides

Replication protein repB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Replication protein repB

Related Entries With Identical Sequence