SMTL ID : 3dlc.1

Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: V.127, R.185 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.127 Water bridges: A:R.185 Salt bridges: A:R.185

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 18 residues within 4Å: Chain A: F.9, M.17, Y.29, G.51, S.52, G.53, D.73, F.74, S.75, M.78, G.100, D.101, V.102, H.103, R.118, G.119, S.120, W.124 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.29, A:G.51, A:F.74, A:D.101, A:V.102, A:H.103 Water bridges: A:S.21, A:Y.29, A:G.55, A:R.118 Salt bridges: A:R.118 pi-Stacking: A:F.74, A:F.74

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: I.20, K.166, N.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.166, A:K.166, A:N.167 Water bridges: A:N.167 GOL.4: 3 residues within 4Å: Chain A: F.9, F.74, S.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.9 Water bridges: A:F.74, A:K.76, A:Q.99

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative S-adenosyl-L-methionine-dependent Methyltransferase (NP_988299.1) from Methanococcus maripaludis JJ (DSM 2067) at 1.15 A resolution. To be published

Release Date

2008-08-26

Peptides

Putative S-adenosyl-L-methionine-dependent Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative S-adenosyl-L-methionine-dependent Methyltransferase