SMTL ID : 3dls.7 (7 other biounits)

Crystal structure of human PAS kinase bound to ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

12 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.160, D.173 Ligands: ADP.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.173, H2O.2 MG.2: 2 residues within 4Å: Chain A: D.173 Ligands: ADP.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.173, A:D.173 MG.3: 2 residues within 4Å: Chain A: P.125, E.226 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:P.125, A:E.226, A:E.226 MG.4: 3 residues within 4Å: Chain A: E.234 Chain C: G.33, G.35 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:G.33, C:G.35, A:E.234, A:E.234 MG.6: 3 residues within 4Å: Chain B: N.160, D.173 Ligands: ADP.10 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.173, H2O.4 MG.7: 3 residues within 4Å: Chain B: K.55, D.173 Ligands: ADP.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.173, B:D.173 MG.8: 2 residues within 4Å: Chain B: P.125, E.226 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:P.125, B:E.226 MG.9: 4 residues within 4Å: Chain A: G.33, G.35, A.36 Chain B: E.234 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:G.33, B:E.234, B:E.234 MG.11: 3 residues within 4Å: Chain C: N.160, D.173 Ligands: ADP.15 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.173 MG.12: 2 residues within 4Å: Chain C: D.173 Ligands: ADP.15 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.173, C:D.173 MG.13: 2 residues within 4Å: Chain C: P.125, E.226 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:P.125, C:E.226, C:E.226, H2O.6 MG.14: 4 residues within 4Å: Chain B: G.33, G.35, A.36 Chain C: E.234 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Metal complexes: B:G.33, C:E.234, C:E.234

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 19 residues within 4Å: Chain A: L.32, G.33, V.40, V.53, K.55, I.92, M.108, E.109, K.110, H.111, G.114, D.116, E.159, N.160, V.162, I.172, D.173 Ligands: MG.1, MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.109, A:H.111, A:D.116, A:D.116, A:D.116 Water bridges: A:N.160, A:D.173 Salt bridges: A:K.55, A:K.55 ADP.10: 19 residues within 4Å: Chain B: L.32, G.33, V.40, V.53, K.55, I.92, M.108, E.109, K.110, H.111, G.114, D.116, E.159, N.160, V.162, I.172, D.173 Ligands: MG.6, MG.7 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.109, B:H.111, B:D.116, B:D.116 Water bridges: B:V.40, B:D.116 Salt bridges: B:K.55, B:K.55 ADP.15: 19 residues within 4Å: Chain C: L.32, G.33, V.40, V.53, K.55, I.92, M.108, E.109, K.110, H.111, G.114, D.116, E.159, N.160, V.162, I.172, D.173 Ligands: MG.11, MG.12 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.109, C:H.111, C:D.116, C:D.116 Salt bridges: C:K.55, C:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kikani, C.K. et al., Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. J.Biol.Chem. (2010)

Release Date

2008-08-26

Peptides

PAS domain-containing serine/threonine-protein kinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PAS domain-containing serine/threonine-protein kinase

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