- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 2 residues within 4Å:- Chain A: R.122, Q.125
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.122
ACT.14: 2 residues within 4Å:- Chain B: R.122, Q.125
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.122
ACT.22: 2 residues within 4Å:- Chain C: R.122, Q.125
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.122
ACT.29: 2 residues within 4Å:- Chain D: R.122, Q.125
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.122
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.8: 17 residues within 4Å:- Chain A: Q.109, G.110, S.111, G.112, K.113, T.114, T.115, K.119, R.140, Q.146, K.248, D.250, G.273, T.274, G.275, E.276
- Chain B: E.276
24 PLIP interactions:23 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.110, A:S.111, A:G.112, A:K.113, A:T.114, A:T.114, A:T.114, A:T.115, A:T.115, A:K.119, A:Q.146, A:K.248, A:K.248, A:G.275
- Water bridges: A:I.108, A:K.113, A:R.140, A:R.140, A:E.276, B:E.276
- Salt bridges: A:K.113, A:R.140, A:D.250, A:E.276
GDP.15: 18 residues within 4Å:- Chain A: E.276
- Chain B: Q.109, G.110, S.111, G.112, K.113, T.114, T.115, K.119, R.140, Q.146, T.247, K.248, D.250, G.273, T.274, G.275, E.276
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:G.110, B:G.112, B:K.113, B:T.114, B:T.115, B:T.115, B:K.119, B:Q.146, B:K.248, B:K.248, B:G.275
- Water bridges: B:K.113, B:D.137
- Salt bridges: B:R.140, B:R.140, B:D.250
GDP.23: 17 residues within 4Å:- Chain C: Q.109, G.110, S.111, G.112, K.113, T.114, T.115, K.119, R.140, Q.146, K.248, D.250, G.273, T.274, G.275, E.276
- Chain D: E.276
24 PLIP interactions:23 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.110, C:S.111, C:G.112, C:K.113, C:T.114, C:T.114, C:T.114, C:T.115, C:T.115, C:K.119, C:Q.146, C:K.248, C:K.248, C:G.275
- Water bridges: C:I.108, C:K.113, C:R.140, C:R.140, C:E.276, D:E.276
- Salt bridges: C:K.113, C:R.140, C:D.250, C:E.276
GDP.30: 18 residues within 4Å:- Chain C: E.276
- Chain D: Q.109, G.110, S.111, G.112, K.113, T.114, T.115, K.119, R.140, Q.146, T.247, K.248, D.250, G.273, T.274, G.275, E.276
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:G.110, D:G.112, D:K.113, D:T.114, D:T.115, D:T.115, D:K.119, D:Q.146, D:K.248, D:K.248, D:G.275
- Water bridges: D:K.113, D:D.137
- Salt bridges: D:R.140, D:R.140, D:D.250
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egea, P.F. et al., Structures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus. Plos One (2008)
- Release Date
- 2008-11-04
- Peptides
- Signal recognition 54 kDa protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egea, P.F. et al., Structures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus. Plos One (2008)
- Release Date
- 2008-11-04
- Peptides
- Signal recognition 54 kDa protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B