SMTL ID : 3dmd.4 (3 other biounits)

Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: F.137, N.138, G.139, S.140, G.141, K.142, T.143, R.169 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.139, A:S.140, A:G.141, A:K.142, A:T.143, A:T.143, A:T.143 Water bridges: A:R.169, A:R.169, A:R.169, A:R.169, A:R.169 Salt bridges: A:R.169 SO4.2: 2 residues within 4Å: Chain A: D.40, R.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.41 SO4.3: 2 residues within 4Å: Chain A: N.138, R.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.138 Water bridges: A:N.138, A:R.169, A:R.222 Salt bridges: A:R.222

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: F.168, R.169, G.171, A.172, R.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.171, A:A.172, A:R.222, A:R.222 Water bridges: A:Y.192 GOL.5: 3 residues within 4Å: Chain A: W.152, H.156, P.312 No protein-ligand interaction detected (PLIP) GOL.6: 4 residues within 4Å: Chain A: A.69, L.70, E.71, R.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.70 Water bridges: A:G.254 GOL.7: 3 residues within 4Å: Chain A: H.190, S.191, A.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egea, P.F. et al., Structures of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus furiosus: Implications for the Targeting Step at the Membrane. Plos One (2008)

Release Date

2008-11-11

Peptides

Signal recognition particle receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Signal recognition particle receptor

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