SMTL ID : 3dmi.1

Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.69 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.69, H2O.1, H2O.2, H2O.2, H2O.2, H2O.4

1 x HEC: HEME C(Covalent)

HEC.2: 22 residues within 4Å: Chain A: N.13, C.14, C.17, H.18, N.23, I.25, K.29, T.30, L.31, A.35, L.36, Y.39, L.40, Q.52, V.53, K.57, N.58, A.59, M.60, P.61, F.63, V.79 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:N.13, A:I.25, A:I.25, A:K.29, A:L.31, A:L.40, A:V.53, A:A.59, A:F.63, A:F.63, A:V.79 Hydrogen bonds: A:T.30, A:N.58 Water bridges: A:K.29, A:Q.52 Salt bridges: A:K.29, A:K.57 Metal complexes: A:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akazaki, H. et al., Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution. Biosci.Biotechnol.Biochem. (2009)

Release Date

2009-03-17

Peptides

cytochrome c6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cytochrome c6