SMTL ID : 3do3.1

Human 1gG1 Fc fragment, 2.5 Angstrom structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.1: 18 residues within 4Å: Chain A: F.6, F.8, P.9, P.10, K.11, D.14, E.23, T.25, V.27, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2, NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.9, A:K.11, A:D.14, A:E.23, A:E.23 NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2: 16 residues within 4Å: Chain B: F.6, F.8, P.9, P.10, K.11, E.23, T.25, V.27, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.1 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:P.9, B:K.11, B:D.14, B:E.23, B:E.23, B:E.23, B:T.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braden, B.C., Human 1gG1 Fc fragment, 2.5 Angstrom structure. To be Published

Release Date

2009-07-21

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region