SMTL ID : 3do4.2 (1 other biounit)

Crystal structure of transthyretin variant T60A at acidic pH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: L.110, L.111, S.112, S.115, Y.116, S.117 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.110 Hydrogen bonds: A:Y.116 Water bridges: B:S.117 ACT.2: 7 residues within 4Å: Chain A: K.70, E.72, H.90, E.92 Chain B: W.41, K.70, E.92 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Water bridges: A:K.70, A:K.70 Salt bridges: A:K.70, A:H.90, B:K.70 ACT.3: 5 residues within 4Å: Chain A: W.41, K.70 Chain B: K.70, H.90, E.92 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Salt bridges: A:K.35, A:K.70, B:K.70, B:H.90 Hydrogen bonds: B:E.92 Water bridges: B:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cendron, L. et al., Amyloidogenic potential of transthyretin variants: Insights from structural and computational analyses. To be Published

Release Date

2009-07-14

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

Transthyretin

Related Entries With Identical Sequence