SMTL ID : 3do5.1

Crystal structure of Putative Homoserine Dehydrogenase (NP_069768.1) from ARCHAEOGLOBUS FULGIDUS at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.11, D.42, S.43, K.60, V.89 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.43, A:S.43, A:S.43 Water bridges: A:D.42, A:K.60, A:V.89, A:V.89 Salt bridges: A:K.60 PO4.2: 6 residues within 4Å: Chain A: T.90, S.114, N.115, K.116, G.117, Y.206 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.90, A:T.90, A:K.116, A:G.117, A:Y.206 Salt bridges: A:K.116 PO4.4: 5 residues within 4Å: Chain B: G.11, D.42, S.43, K.60, V.89 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.43, B:S.43, B:S.43 Water bridges: B:D.42, B:K.60, B:V.89, B:V.89 Salt bridges: B:K.60 PO4.5: 6 residues within 4Å: Chain B: T.90, S.114, N.115, K.116, G.117, Y.206 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.90, B:T.90, B:K.116, B:G.117 Salt bridges: B:K.116

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: V.226, K.227, D.232, S.263, R.264, E.265, K.266, L.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.264 PEG.6: 8 residues within 4Å: Chain B: V.226, K.227, D.232, S.263, R.264, E.265, K.266, L.267 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative Homoserine Dehydrogenase (NP_069768.1) from ARCHAEOGLOBUS FULGIDUS at 2.20 A resolution. To be published

Release Date

2008-09-02

Peptides

Homoserine dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Homoserine dehydrogenase