SMTL ID : 3dox.1

X-ray structure of HIV-1 protease in situ product complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SER- GLN- ASN- TYR: A PEPTIDE SUBSTRATE-SQNY(Non-covalent)

SER-GLN-ASN-TYR.1: 17 residues within 4Å: Chain A: R.8, D.25, P.81, V.82, D.129, G.131, A.132, D.133, D.134, V.136, M.150, I.151, G.152, G.153, I.154, F.157 Ligands: PRO-ILE-VAL.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.81, A:I.154 Hydrogen bonds: A:R.8, A:R.8, A:G.131, A:D.133, A:D.134, A:D.134, A:G.152 Water bridges: A:G.131, A:I.154

1 x PRO- ILE- VAL: A PEPTIDE SUBSTRATE-PIV(Non-covalent)

PRO-ILE-VAL.2: 14 residues within 4Å: Chain A: G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, L.76, I.84, D.129, I.154 Ligands: SER-GLN-ASN-TYR.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.28, A:D.29, A:V.32, A:I.47, A:I.84, A:I.154 Hydrogen bonds: A:D.29, A:D.30, A:D.30 Water bridges: A:G.27, A:G.27, A:K.45, A:G.48, A:I.50 Salt bridges: A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bihani, S. et al., X-ray structure of HIV-1 protease in situ product complex. Proteins (2009)

Release Date

2008-09-09

Peptides

HIV-1 PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HIV-1 PROTEASE

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