SMTL ID : 3dpk.1

cFMS tyrosine kinase in complex with a pyridopyrimidinone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: V.14, R.15, K.17, R.190 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.15, A:K.17, A:R.190 SO4.2: 4 residues within 4Å: Chain A: L.138, R.142, N.221, N.267 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.221, A:N.267 Water bridges: A:R.142, A:R.142 Salt bridges: A:R.142 SO4.3: 3 residues within 4Å: Chain A: Q.290, P.295, K.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.290, A:K.296

1 x 8C5: 8-cyclohexyl-N-methoxy-5-oxo-2-{[4-(2-pyrrolidin-1-ylethyl)phenyl]amino}-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxamide(Non-covalent)

8C5.4: 24 residues within 4Å: Chain A: K.52, T.53, L.54, G.55, A.56, V.62, A.80, K.82, E.99, M.103, V.113, T.129, E.130, Y.131, C.132, C.133, G.135, D.136, R.195, L.198, D.209, F.210, A.213, R.214 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.80, A:Y.131, A:L.198, A:F.210, A:F.210 Hydrogen bonds: A:K.82, A:E.99, A:T.129, A:C.132, A:C.132 Water bridges: A:T.129, A:T.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Pyrido[2,3-d]pyrimidin-5-ones: a novel class of antiinflammatory macrophage colony-stimulating factor-1 receptor inhibitors. J.Med.Chem. (2009)

Release Date

2009-02-17

Peptides

Macrophage colony-stimulating factor 1 receptor, Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor, Fibroblast growth factor receptor 1

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