SMTL ID : 3dr3.1 (2 other biounits)

Structure of IDP00107, a potential N-acetyl-gamma-glutamylphosphate reductase from Shigella flexneri

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: V.24, N.25, R.26, H.27, M.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.25 NA.2: 3 residues within 4Å: Chain A: Y.267, K.270, V.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.268, A:K.270 NA.4: 5 residues within 4Å: Chain B: V.24, N.25, R.26, H.27, M.30 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.24 NA.5: 3 residues within 4Å: Chain B: Y.267, K.270, V.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.270, B:V.273 NA.7: 5 residues within 4Å: Chain C: V.24, N.25, R.26, H.27, M.30 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.25 NA.8: 3 residues within 4Å: Chain C: Y.267, K.270, V.273 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.267, C:K.270 NA.10: 5 residues within 4Å: Chain D: V.24, N.25, R.26, H.27, M.30 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.27 NA.11: 3 residues within 4Å: Chain D: Y.267, K.270, V.273 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.270, D:V.273

4 x MLT: D-MALATE(Non-covalent)

MLT.3: 7 residues within 4Å: Chain A: Y.15, Q.54, R.240, L.312 Chain C: C.203 Chain D: K.284, N.285 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:Q.54, D:K.284 Water bridges: A:Q.54, A:R.240 Salt bridges: A:R.240, D:K.284 MLT.6: 7 residues within 4Å: Chain B: Y.15, Q.54, R.240, L.312 Chain C: K.284, N.285 Chain D: C.203 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:Q.54, C:K.284 Water bridges: B:Q.54, B:R.240 Salt bridges: B:R.240, C:K.284 MLT.9: 7 residues within 4Å: Chain A: C.203 Chain B: K.284, N.285 Chain C: Y.15, Q.54, R.240, L.312 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Q.54, B:K.284 Water bridges: C:E.19, C:Q.54, C:R.240 Salt bridges: C:R.240, B:K.284 MLT.12: 7 residues within 4Å: Chain A: K.284, N.285 Chain B: C.203 Chain D: Y.15, Q.54, R.240, L.312 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain D Hydrogen bonds: A:K.284, D:Q.54 Salt bridges: A:K.284, D:R.240 Water bridges: D:E.19, D:Q.54, D:R.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singer, A.U. et al., Structure of IDP00107, a potential N-acetyl-gamma-glutamylphosphate reductase from Shigella flexneri. To be Published

Release Date

2008-08-05

Peptides

N-acetyl-gamma-glutamyl-phosphate reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

N-acetyl-gamma-glutamyl-phosphate reductase

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