SMTL ID : 3drw.1

Crystal Structure of a Phosphofructokinase from Pyrococcus horikoshii OT3 with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain A: H.357, T.358, T.359, T.441, R.442, L.443, V.444, P.447, L.453, G.454, I.457 Ligands: NA.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.357, A:T.358, A:V.444, A:V.444 Water bridges: A:T.450, A:G.452 AMP.4: 12 residues within 4Å: Chain B: H.357, T.358, T.359, T.441, R.442, L.443, V.444, P.447, T.450, L.453, G.454, I.457 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.357, B:T.358, B:V.444, B:V.444, B:T.450 Water bridges: B:G.454, B:G.454, B:G.454

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.126, R.391, D.396, I.397 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.126, A:I.397 Water bridges: A:T.126, A:R.391 NA.3: 4 residues within 4Å: Chain A: G.452, L.453, G.454 Ligands: AMP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.452, A:G.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Currie, M.A. et al., ADP-dependent 6-phosphofructokinase from Pyrococcus horikoshii OT3: structure determination and biochemical characterization of PH1645. J.Biol.Chem. (2009)

Release Date

2008-12-23

Peptides

ADP-specific phosphofructokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-specific phosphofructokinase