SMTL ID : 3dsw.1

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with mono-prenylated peptide Ser-Cys(GG)-Ser-Cys derivated from Rab7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.3 Chain B: D.238, C.240, H.290 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.238, B:D.238, B:C.240, B:H.290, A:H.3

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.64, M.66 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.64, B:M.66, H2O.8, H2O.8, H2O.9

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.3: 10 residues within 4Å: Chain B: Y.51, L.96, Q.103, F.147, G.192, Y.195, C.196, W.244, F.293, C.314 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.96, B:F.147, B:F.147, B:W.244, B:W.244, B:F.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Z. et al., Structures of RabGGTase-substrate/product complexes provide insights into the evolution of protein prenylation. Embo J. (2008)

Release Date

2008-09-09

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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