- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.5: 25 residues within 4Å:- Chain A: H.266, P.287, S.288, A.289, C.290, G.291, K.292, T.293, N.294, D.313, V.337, P.339, G.340, R.407, R.438, W.518, F.519, F.527, G.531, F.532, N.535
- Ligands: MN.1, MN.2, MN.3, SPV.6
25 PLIP interactions:25 interactions with chain A- Hydrogen bonds: A:A.289, A:C.290, A:G.291, A:K.292, A:T.293, A:N.294, A:N.294, A:V.337, A:G.340, A:R.438, A:F.532, A:N.535
- Water bridges: A:T.345, A:R.407, A:R.407, A:R.438, A:W.529, A:P.530, A:P.530
- Salt bridges: A:K.292, A:K.292, A:R.407
- pi-Stacking: A:F.532, A:F.532
- pi-Cation interactions: A:F.527
GTP.12: 22 residues within 4Å:- Chain B: H.266, P.287, S.288, A.289, C.290, G.291, K.292, T.293, N.294, D.313, V.337, R.407, R.438, W.518, F.519, F.527, G.531, F.532, N.535
- Ligands: MN.9, MN.10, SPV.13
27 PLIP interactions:27 interactions with chain B- Hydrogen bonds: B:A.289, B:C.290, B:G.291, B:K.292, B:T.293, B:N.294, B:R.438, B:F.532, B:N.535
- Water bridges: B:A.289, B:N.294, B:N.294, B:V.337, B:V.337, B:G.340, B:T.345, B:R.438, B:W.518, B:W.529, B:W.529, B:P.530
- Salt bridges: B:K.292, B:K.292, B:R.407
- pi-Stacking: B:F.532, B:F.532
- pi-Cation interactions: B:F.527
- 2 x SPV: SULFOPYRUVATE(Non-covalent)
SPV.6: 14 residues within 4Å:- Chain A: R.89, G.238, G.239, K.245, K.246, H.266, S.288, D.313, F.335, R.407, A.469, F.487
- Ligands: MN.1, GTP.5
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:G.239, A:S.288, A:R.407
- Water bridges: A:R.89, A:K.245, A:A.469
- Salt bridges: A:R.89, A:R.89, A:K.246, A:K.246, A:H.266, A:R.407, A:R.407
SPV.13: 13 residues within 4Å:- Chain B: R.89, G.238, G.239, K.245, K.246, H.266, S.288, D.313, F.335, R.407, F.487
- Ligands: MN.9, GTP.12
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.239, B:S.288, B:R.407
- Water bridges: B:R.89, B:R.89, B:R.89, B:K.245, B:R.407
- Salt bridges: B:R.89, B:R.89, B:K.246, B:K.246, B:H.266, B:R.407, B:R.407
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x ETX: 2-ETHOXYETHANOL(Non-covalent)
ETX.8: 7 residues within 4Å:- Chain A: A.449, S.451, W.452, L.510, P.511, K.512, I.513
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.510
- Hydrogen bonds: A:A.449, A:I.513
- Water bridges: A:K.512, A:K.512
ETX.14: 8 residues within 4Å:- Chain B: E.448, A.449, S.451, W.452, L.510, P.511, K.512, I.513
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.510
- Hydrogen bonds: B:I.513, B:I.513
- Water bridges: B:K.512
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sullivan, S.M. et al., Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-08-26
- Peptides
- Phosphoenolpyruvate carboxykinase, cytosolic [GTP]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x SPV: SULFOPYRUVATE(Non-covalent)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x ETX: 2-ETHOXYETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sullivan, S.M. et al., Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-08-26
- Peptides
- Phosphoenolpyruvate carboxykinase, cytosolic [GTP]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B