SMTL ID : 3dup.1

Crystal structure of mutt/nudix family hydrolase from rhodospirillum rubrum atcc 11170

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.108, R.140, K.144 Ligands: GOL.2, GOL.4 9 PLIP interactions: 9 interactions with chain A Water bridges: A:R.108, A:R.108, A:R.140, A:R.140, A:R.140 Salt bridges: A:R.108, A:R.140, A:K.144, A:K.250 PO4.5: 4 residues within 4Å: Chain B: R.108, R.140, K.144 Ligands: GOL.9 10 PLIP interactions: 10 interactions with chain B Water bridges: B:R.108, B:R.108, B:R.140, B:R.140, B:K.250, B:K.250 Salt bridges: B:R.108, B:R.140, B:K.144, B:K.250

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: G.120, H.122, G.157, G.158, L.208, K.250, N.252 Ligands: PO4.1, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.250, A:N.252 Water bridges: A:R.140, A:K.204, A:K.250, A:K.250 GOL.3: 9 residues within 4Å: Chain A: A.79, G.82, V.83, V.84, A.86 Chain B: S.145, V.146, A.147, P.200 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.82, A:A.86, B:A.147 Water bridges: A:A.79, A:D.80 GOL.4: 5 residues within 4Å: Chain A: R.108, V.146, K.250 Ligands: PO4.1, GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.108, A:K.204 Water bridges: A:R.108 GOL.6: 6 residues within 4Å: Chain B: Y.126, Q.186, I.188, D.212, L.213, A.214 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.186, B:A.214 GOL.7: 6 residues within 4Å: Chain B: R.166, R.185, Q.186, A.187, I.188, P.189 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.166, B:Q.186, B:A.187 GOL.8: 3 residues within 4Å: Chain B: P.87, R.88, G.89 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.88 Water bridges: B:G.89, A:P.148 GOL.9: 10 residues within 4Å: Chain B: R.108, H.122, R.140, A.156, G.157, G.158, L.208, K.250, N.252 Ligands: PO4.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.108, B:R.140, B:A.156 Water bridges: B:K.250, B:N.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Mutt/Nudix Family Hydrolase from Rhodospirillum Rubrum. To be Published

Release Date

2008-09-02

Peptides

MutT/nudix family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MutT/nudix family protein