SMTL ID : 3dus.2 (1 other biounit)

Crystal structure of SAG506-01, orthorhombic, twinned, crystal 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid(Non-covalent)

KDO.1: 10 residues within 4Å: Chain A: K.31, Y.38, S.97, Y.98, R.101 Chain B: Y.33, F.50, R.52, D.106 Ligands: PG4.4 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:K.31, A:S.97, A:R.101, A:R.101, B:Y.33, B:Y.33, B:D.106 Water bridges: A:K.31, A:R.33, A:R.33, A:L.100 Salt bridges: B:R.52

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.61 Chain B: D.109 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.61, B:D.109, H2O.2 MG.3: 2 residues within 4Å: Chain A: Q.85, E.87 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 5 residues within 4Å: Chain B: R.52, A.55, K.56, Y.103 Ligands: KDO.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., Pseudo-symmetry and twinning in crystals of homologous antibody Fv fragments. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-12-02

Peptides

antibody Fv fragment SAG506-01: A
Ig-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

antibody Fv fragment SAG506-01

Ig-like protein

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