SMTL ID : 3duv.1

Crystal structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the-configuration

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid(Non-covalent)

KDO.1: 10 residues within 4Å: Chain A: Q.98, V.142, R.157, H.185, G.187, Y.189, K.212, L.213, E.214, Q.215 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.98, A:H.185, A:Y.189, A:E.214, A:E.214, A:E.214, A:Q.215 Water bridges: A:V.142, A:K.212 Salt bridges: A:R.157 KDO.3: 12 residues within 4Å: Chain B: Q.98, D.100, V.142, R.157, H.185, G.187, Y.189, K.212, L.213, E.214, Q.215, D.239 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.98, B:R.157, B:H.185, B:H.185, B:Y.189, B:Y.189, B:K.212, B:E.214, B:E.214, B:E.214, B:Q.215 Water bridges: B:Q.98, B:E.101, B:V.142, B:R.184, B:G.187, B:K.212, B:E.214, A:R.164

1 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.2: 5 residues within 4Å: Chain A: N.73, P.204, Q.206, N.209, K.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.73, A:N.209, A:K.212 Water bridges: A:N.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the beta-configuration. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-12-09

Peptides

3-deoxy-manno-octulosonate cytidylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-deoxy-manno-octulosonate cytidylyltransferase