SMTL ID : 3dwa.1

Crystal structure of the B-subunit of the AB5 toxin from E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-pentamer

Ligands

5 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 7 residues within 4Å: Chain A: N.62, L.65, Y.66, T.69 Chain C: L.65 Ligands: 1PE.3, 1PE.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.69 1PE.2: 8 residues within 4Å: Chain B: N.62, Y.66, T.69, T.70 Chain D: Y.66 Chain E: L.65, T.69 Ligands: 1PE.5 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.66 1PE.3: 8 residues within 4Å: Chain C: N.62, L.65, Y.66, T.69, T.70 Chain D: T.69 Ligands: 1PE.1, 1PE.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.69 1PE.4: 7 residues within 4Å: Chain B: T.69 Chain D: N.62, L.65, Y.66, T.69, T.70 Ligands: 1PE.3 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.62 1PE.5: 5 residues within 4Å: Chain E: N.62, Y.66, T.69 Ligands: 1PE.1, 1PE.2 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byres, E. et al., Incorporation of a non-human glycan mediates human susceptibility to a bacterial toxin. Nature (2008)

Release Date

2008-11-04

Peptides

Subtilase cytotoxin, subunit B: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Subtilase cytotoxin, subunit B

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