SMTL ID : 3dwf.1 (2 other biounits)

Crystal Structure of the Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278E

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.18, A.19, S.20, K.21, G.22, I.23, A.42, R.43, S.44, G.68, S.69, M.70, N.96, H.97, V.98, Y.100, V.145, S.146, S.147, Y.160, K.164, L.192, G.193, L.194, I.195, T.197, T.199, A.200 Ligands: GOL.3 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.192 Hydrogen bonds: A:G.18, A:S.20, A:S.20, A:K.21, A:I.23, A:R.43, A:S.44, A:S.69, A:M.70, A:N.96, A:V.98, A:Y.160, A:K.164, A:I.195, A:T.197, A:T.197, A:T.199, A:T.199 Water bridges: A:G.24, A:N.96, A:T.199 Salt bridges: A:K.21, A:K.21, A:R.43 NAP.4: 28 residues within 4Å: Chain B: G.18, A.19, S.20, K.21, G.22, I.23, A.42, R.43, S.44, G.68, S.69, M.70, N.96, H.97, V.98, V.145, S.146, S.147, Y.160, K.164, L.192, G.193, L.194, I.195, T.197, T.199, A.200 Ligands: GOL.7 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:L.192 Hydrogen bonds: B:G.18, B:S.20, B:S.20, B:K.21, B:I.23, B:R.43, B:S.44, B:S.69, B:M.70, B:N.96, B:V.98, B:Y.160, B:K.164, B:I.195, B:I.195, B:T.199 Water bridges: B:G.24, B:R.43, B:N.96, B:T.197 Salt bridges: B:K.21, B:K.21, B:R.43 NAP.8: 28 residues within 4Å: Chain C: G.18, A.19, S.20, K.21, G.22, I.23, A.42, R.43, S.44, G.68, S.69, M.70, N.96, H.97, V.98, Y.100, V.145, S.146, S.147, Y.160, K.164, L.192, G.193, L.194, I.195, T.197, T.199, A.200 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:L.192 Hydrogen bonds: C:G.18, C:S.20, C:S.20, C:K.21, C:I.23, C:R.43, C:S.44, C:S.69, C:M.70, C:N.96, C:V.98, C:Y.160, C:K.164, C:I.195, C:I.195, C:T.197, C:T.199, C:T.199 Water bridges: C:G.24 Salt bridges: C:K.21, C:K.21, C:R.43 pi-Cation interactions: C:H.97 NAP.11: 28 residues within 4Å: Chain D: G.18, A.19, S.20, K.21, G.22, I.23, A.42, R.43, S.44, G.68, S.69, M.70, N.96, H.97, V.98, V.145, S.146, S.147, Y.160, K.164, L.192, G.193, L.194, I.195, T.197, T.199, A.200 Ligands: GOL.17 23 PLIP interactions: 22 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:L.192 Hydrogen bonds: D:G.18, D:S.20, D:S.20, D:K.21, D:I.23, D:R.43, D:S.44, D:S.69, D:M.70, D:N.96, D:V.98, D:Y.160, D:K.164, D:I.195, D:T.197, D:T.199 Water bridges: D:G.24, D:T.197, A:E.198 Salt bridges: D:K.21, D:K.21, D:R.43

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: K.21, G.22, R.25, T.197, E.198, K.215 Chain D: K.115 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:G.22, A:E.198, A:E.198 Water bridges: A:G.22, A:R.25, A:T.199, A:K.215, A:K.215 Salt bridges: A:R.25, A:K.215, D:K.115 SO4.5: 6 residues within 4Å: Chain B: K.21, G.22, R.25, T.197, E.198, K.215 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.22, B:E.198, B:E.198 Water bridges: B:R.25, B:T.199 Salt bridges: B:R.25, B:K.215 SO4.9: 7 residues within 4Å: Chain C: K.21, G.22, R.25, T.197, E.198, K.215 Ligands: SO4.10 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.22, C:E.198 Salt bridges: C:R.25, C:K.215 SO4.10: 2 residues within 4Å: Chain C: R.25 Ligands: SO4.9 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.25, C:R.25 Salt bridges: C:R.25 SO4.12: 5 residues within 4Å: Chain D: G.22, R.25, T.197, E.198, K.215 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.22, D:E.198 Water bridges: D:T.199, D:K.215 Salt bridges: D:R.25, D:K.215

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.147, L.194 Ligands: NAP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.147 GOL.6: 3 residues within 4Å: Chain B: R.25, K.50, R.54 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.25, B:R.25, B:R.54 Water bridges: B:K.50 GOL.7: 3 residues within 4Å: Chain B: S.147, Y.160 Ligands: NAP.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.147, B:Y.160 GOL.13: 9 residues within 4Å: Chain C: G.150, K.151, F.165, D.168, R.250 Chain D: K.151, F.165, N.247, R.250 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:K.151, C:D.168, C:R.250, D:K.151, D:N.247, D:R.250 GOL.14: 3 residues within 4Å: Chain D: S.238, R.239, W.240 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.238, D:R.239, D:R.239 GOL.15: 9 residues within 4Å: Chain C: F.105, F.106 Chain D: M.136, E.177, N.181, V.183, Y.273, G.274, W.276 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.177, D:N.181, D:G.274, D:G.274 GOL.16: 2 residues within 4Å: Chain D: R.25, K.50 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.25, D:R.25, D:K.50, D:K.50 GOL.17: 5 residues within 4Å: Chain A: R.25 Chain D: R.43, S.69, E.71 Ligands: NAP.11 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:R.43, D:S.69, D:E.71, A:R.25, A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawson, A.J. et al., Mutations of key hydrophobic surface residues of 11 beta-hydroxysteroid dehydrogenase type 1 increase solubility and monodispersity in a bacterial expression system. Protein Sci. (2009)

Release Date

2009-08-11

Peptides

11-beta-hydroxysteroid dehydrogenase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

11-beta-hydroxysteroid dehydrogenase 1

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