SMTL ID : 3dxp.1

Crystal structure of a putative aminoglycoside phosphotransferase (reut_a1007) from ralstonia eutropha jmp134 at 2.32 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.226, N.227, D.242 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.242, H2O.4, H2O.4, H2O.4 CA.4: 3 residues within 4Å: Chain B: D.226, N.227, D.242 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.242, H2O.8, H2O.8, H2O.8

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: T.142, D.146, P.283, L.291 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.283, A:L.291 Hydrogen bonds: A:D.146 ACT.5: 4 residues within 4Å: Chain B: T.142, D.146, P.283, L.291 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.283, B:L.291 Hydrogen bonds: B:D.146

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: L.275, D.276, L.280 Chain B: N.305, K.356 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.276, B:N.305 Water bridges: B:N.305 EDO.6: 5 residues within 4Å: Chain A: N.305, K.356 Chain B: L.275, D.276, L.280 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.305, B:D.276 Water bridges: A:N.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative acyl-CoA dehydrogenase (YP_295230.1) from RALSTONIA EUTROPHA JMP134 at 2.32 A resolution. To be published

Release Date

2008-08-12

Peptides

putative acyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

putative acyl-CoA dehydrogenase