SMTL ID : 3dxv.1

The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: S.112, G.113, S.114, N.117, Y.140, H.141, G.142, E.208, S.212, D.241, V.243, K.244, K.270 Chain B: Q.297, T.298 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.140, A:V.243, A:K.270 Hydrogen bonds: A:G.113, A:S.114, A:N.117, A:S.212, A:K.270, B:Q.297, B:T.298, B:T.298 Water bridges: A:H.111 Salt bridges: A:K.270 pi-Stacking: A:Y.140 PLP.2: 15 residues within 4Å: Chain A: Q.297, T.298 Chain B: S.112, G.113, S.114, N.117, Y.140, H.141, G.142, E.208, S.212, D.241, V.243, K.244, K.270 17 PLIP interactions: 3 interactions with chain A, 14 interactions with chain B Hydrogen bonds: A:Q.297, A:T.298, B:G.113, B:S.114, B:N.117, B:S.212, B:S.212, B:K.270 Water bridges: A:L.299, B:H.111, B:S.114, B:S.114, B:L.278 Hydrophobic interactions: B:V.243, B:K.270 Salt bridges: B:K.270 pi-Stacking: B:Y.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okazaki, S. et al., The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae. Biochemistry (2009)

Release Date

2009-02-17

Peptides

Alpha-amino-epsilon-caprolactam racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-amino-epsilon-caprolactam racemase

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