SMTL ID : 3dy6.1 (1 other biounit)

PPARdelta complexed with an anthranilic acid partial agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: N.129, N.169 Ligand excluded by PLIP

2 x DY6: 2-({[3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)phenyl]carbonyl}amino)benzoic acid(Non-covalent)

DY6.2: 18 residues within 4Å: Chain A: W.58, V.75, F.76, R.78, C.79, T.82, T.83, F.121, L.124, L.133, V.135, V.142, L.147, I.158, K.161, H.243, M.247, Y.267 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.58, A:V.75, A:F.76, A:R.78, A:T.82, A:F.121, A:L.124, A:L.133, A:V.135, A:V.142, A:L.147 pi-Cation interactions: A:H.243 DY6.3: 20 residues within 4Å: Chain B: W.58, V.75, F.76, R.78, C.79, Q.80, T.82, T.83, F.121, L.124, L.133, V.135, V.142, L.147, I.157, I.158, K.161, H.243, M.247, Y.267 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.58, B:V.75, B:F.76, B:R.78, B:Q.80, B:T.82, B:F.121, B:L.124, B:L.133, B:V.135, B:V.142, B:L.147, B:I.157 Hydrogen bonds: B:T.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shearer, B.G. et al., Discovery of a novel class of PPARdelta partial agonists. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-10-07

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

Related Entries With Identical Sequence