SMTL ID : 3dzm.5 (4 other biounits)

Crystal structure of a major outer membrane protein from Thermus thermophilus HB27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.52, L.54, D.56, K.70, E.77 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.52, A:L.54, A:D.56, A:E.77 CA.4: 5 residues within 4Å: Chain B: D.52, L.54, D.56, K.70, E.77 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:L.54, B:D.56, B:E.77, B:E.77 CA.7: 4 residues within 4Å: Chain C: D.52, L.54, D.56, E.77 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.52, C:L.54, C:D.56, C:E.77

6 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.2: 9 residues within 4Å: Chain A: G.21, S.51, N.81, F.112, T.198, Q.199, P.200, E.201, W.202 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.202 Hydrogen bonds: A:S.51, A:N.81, A:N.81, A:E.201, A:W.202 C8E.3: 6 residues within 4Å: Chain A: Y.161, Q.164, N.194, V.197, Q.199, E.201 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.161, A:Y.161 Hydrogen bonds: A:Q.164, A:N.194, A:V.197, A:Q.199, A:Q.199 C8E.5: 11 residues within 4Å: Chain B: G.21, S.51, N.81, Y.161, T.198, Q.199, P.200, E.201, W.202, V.203 Ligands: C8E.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.51, B:N.81, B:N.81, B:E.201, B:W.202 C8E.6: 9 residues within 4Å: Chain B: Y.161, F.163, Q.164, N.194, V.197, T.198, Q.199, E.201 Ligands: C8E.5 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.163, B:Q.164 Hydrogen bonds: B:Y.161, B:Q.164, B:Q.164, B:N.194, B:Q.199, B:Q.199, B:Q.199, B:E.201 C8E.8: 9 residues within 4Å: Chain C: Y.161, Y.162, F.163, Q.164, N.194, V.197, T.198, Q.199, E.201 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.163, C:F.163 Hydrogen bonds: C:Q.164, C:N.194, C:Q.199, C:Q.199, C:Q.199 C8E.9: 11 residues within 4Å: Chain C: G.21, S.51, D.52, N.81, F.112, T.198, Q.199, P.200, E.201, W.202, V.203 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.51, C:E.201, C:W.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosig, A. et al., Crystal structure of a major outer membrane protein from Thermus thermophilus HB27. J.Mol.Biol. (2009)

Release Date

2008-12-23

Peptides

Hypothetical conserved protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Hypothetical conserved protein

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