SMTL ID : 3dzw.3 (2 other biounits)

Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.1: 8 residues within 4Å: Chain A: Q.89, D.91, N.93, Y.97 Chain B: N.83, A.103, N.107 Ligands: PO4.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.89, A:D.91, A:N.93, A:Y.97, A:Y.97 MAN-MAN.2: 5 residues within 4Å: Chain A: Q.26, D.28, N.30, Y.34 Ligands: PO4.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.26, A:Y.34 MAN-MAN.3: 5 residues within 4Å: Chain A: Q.57, D.59, N.61, Y.65, P.71 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.59 MAN-MAN.6: 8 residues within 4Å: Chain A: N.83, A.103, N.107 Chain B: Q.89, D.91, N.93, Y.97 Ligands: PO4.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.89, B:D.91, B:N.93, B:Y.97 MAN-MAN.7: 5 residues within 4Å: Chain B: Q.26, D.28, N.30, Y.34 Ligands: PO4.9 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.26, B:Y.34 MAN-MAN.8: 5 residues within 4Å: Chain B: Q.57, D.59, N.61, Y.65, P.71 No protein-ligand interaction detected (PLIP)

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: P.39, W.41, A.42 Ligands: MAN-MAN.2 No protein-ligand interaction detected (PLIP) PO4.5: 4 residues within 4Å: Chain A: D.91 Chain B: Y.5, E.8 Ligands: MAN-MAN.1 3 PLIP interactions: 3 interactions with chain B Water bridges: B:S.6, B:N.83, B:N.83 PO4.9: 4 residues within 4Å: Chain B: P.39, W.41, A.42 Ligands: MAN-MAN.7 No protein-ligand interaction detected (PLIP) PO4.10: 4 residues within 4Å: Chain A: Y.5, E.8 Chain B: D.91 Ligands: MAN-MAN.6 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.91, A:E.8 Water bridges: A:S.6, A:N.83, A:N.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rizkallah, P.J. et al., Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II. To be Published

Release Date

2009-08-11

Peptides

Agglutinin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Agglutinin

Related Entries With Identical Sequence