SMTL ID : 3e02.1

Crystal structure of a duf849 family protein (bxe_c0271) from burkholderia xenovorans lb400 at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.50, H.52, R.255, E.259 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.50, A:H.52, A:E.259, H2O.1, H2O.1 ZN.12: 4 residues within 4Å: Chain B: H.50, H.52, R.255, E.259 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.50, B:H.52, B:E.259, H2O.13, H2O.13 ZN.23: 4 residues within 4Å: Chain C: H.50, H.52, R.255, E.259 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.50, C:H.52, C:E.259, H2O.24, H2O.25 ZN.34: 4 residues within 4Å: Chain D: H.50, H.52, R.255, E.259 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.50, D:H.52, D:E.259, H2O.36, H2O.36

40 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: S.264, K.279 Ligands: EDO.11 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: F.119, Y.174, L.234, E.259, D.260 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: T.130, F.131, R.137 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: A.124, K.127, Y.263 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: P.25, Y.26, L.27, P.28, E.33, E.37 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: L.91, G.92, P.138, Y.139, G.142, T.143, F.146 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: I.29, T.30, P.56, L.57 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: G.202, I.203, L.204, G.206, I.207, G.208 Chain B: Y.180 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: L.95, S.153, Q.154, R.157 Chain B: D.145 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: E.275, R.278, K.279, R.282 Ligands: EDO.2 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain B: S.264, K.279 Ligands: EDO.22 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: F.119, Y.174, L.234, E.259, D.260 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain B: T.130, F.131, R.137 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain B: A.124, K.127, Y.263 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: P.25, Y.26, L.27, P.28, E.33, E.37 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain B: L.91, G.92, P.138, Y.139, G.142, T.143, F.146 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain B: I.29, T.30, P.56, L.57 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: Y.180 Chain B: G.202, I.203, L.204, G.206, I.207, G.208 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain A: D.145 Chain B: L.95, S.153, Q.154, R.157 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain B: E.275, R.278, K.279, R.282 Ligands: EDO.13 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain C: S.264, K.279 Ligands: EDO.33 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain C: F.119, Y.174, L.234, E.259, D.260 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain C: T.130, F.131, R.137 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain C: A.124, K.127, Y.263 Ligand excluded by PLIP EDO.28: 6 residues within 4Å: Chain C: P.25, Y.26, L.27, P.28, E.33, E.37 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain C: L.91, G.92, P.138, Y.139, G.142, T.143, F.146 Ligand excluded by PLIP EDO.30: 4 residues within 4Å: Chain C: I.29, T.30, P.56, L.57 Ligand excluded by PLIP EDO.31: 7 residues within 4Å: Chain C: G.202, I.203, L.204, G.206, I.207, G.208 Chain D: Y.180 Ligand excluded by PLIP EDO.32: 5 residues within 4Å: Chain C: L.95, S.153, Q.154, R.157 Chain D: D.145 Ligand excluded by PLIP EDO.33: 5 residues within 4Å: Chain C: E.275, R.278, K.279, R.282 Ligands: EDO.24 Ligand excluded by PLIP EDO.35: 3 residues within 4Å: Chain D: S.264, K.279 Ligands: EDO.44 Ligand excluded by PLIP EDO.36: 5 residues within 4Å: Chain D: F.119, Y.174, L.234, E.259, D.260 Ligand excluded by PLIP EDO.37: 3 residues within 4Å: Chain D: T.130, F.131, R.137 Ligand excluded by PLIP EDO.38: 3 residues within 4Å: Chain D: A.124, K.127, Y.263 Ligand excluded by PLIP EDO.39: 6 residues within 4Å: Chain D: P.25, Y.26, L.27, P.28, E.33, E.37 Ligand excluded by PLIP EDO.40: 7 residues within 4Å: Chain D: L.91, G.92, P.138, Y.139, G.142, T.143, F.146 Ligand excluded by PLIP EDO.41: 4 residues within 4Å: Chain D: I.29, T.30, P.56, L.57 Ligand excluded by PLIP EDO.42: 7 residues within 4Å: Chain C: Y.180 Chain D: G.202, I.203, L.204, G.206, I.207, G.208 Ligand excluded by PLIP EDO.43: 5 residues within 4Å: Chain C: D.145 Chain D: L.95, S.153, Q.154, R.157 Ligand excluded by PLIP EDO.44: 5 residues within 4Å: Chain D: E.275, R.278, K.279, R.282 Ligands: EDO.35 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function (DUF849) (YP_555544.1) from BURKHOLDERIA XENOVORANS LB400 at 1.90 A resolution. To be published

Release Date

2008-08-12

Peptides

uncharacterized protein DUF849: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

uncharacterized protein DUF849