SMTL ID : 3e23.1

Crystal structure of the RPA2492 protein in complex with SAM from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR299

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.142, R.154, Y.156, G.186, F.187, F.194 Ligands: SAM.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.156, A:Y.156, A:F.187 Water bridges: A:R.27 Salt bridges: A:K.142, A:R.154 SO4.2: 6 residues within 4Å: Chain A: R.30, T.33, H.109, S.182, F.194, H.196 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.182, A:S.182 Water bridges: A:R.30, A:R.30, A:S.140 Salt bridges: A:R.30, A:H.109, A:H.196 SO4.3: 2 residues within 4Å: Chain A: W.163, R.167 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.163 Salt bridges: A:R.167 SO4.4: 7 residues within 4Å: Chain A: R.117, G.144, E.145, Y.158, P.159, S.160, W.163 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.144, A:S.160 Water bridges: A:S.160, A:S.160 Salt bridges: A:R.117 SO4.5: 7 residues within 4Å: Chain A: S.143, P.159, S.160, E.161, E.162, Q.193, L.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.143, A:S.143, A:E.161, A:Q.193 Water bridges: A:G.144

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.6: 19 residues within 4Å: Chain A: F.9, L.14, Y.17, Y.24, P.29, G.51, G.53, D.72, G.73, S.74, L.77, M.92, L.93, F.94, H.109, A.110, C.111, H.114 Ligands: SO4.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.24, A:G.51, A:G.53, A:G.73, A:S.74, A:F.94, A:H.109 Water bridges: A:A.8, A:G.51, A:H.95, A:H.109 Salt bridges: A:H.109 pi-Stacking: A:F.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Crystal structure of the RPA2492 protein in complex with SAM from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR299. To be Published

Release Date

2008-09-30

Peptides

uncharacterized protein RPA2492: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

uncharacterized protein RPA2492