SMTL ID : 3e2m.1 (2 other biounits)

LFA-1 I domain bound to inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x E2M: cis-4-{[2-({4-[(1E)-3-morpholin-4-yl-3-oxoprop-1-en-1-yl]-2,3-bis(trifluoromethyl)phenyl}sulfanyl)phenoxy]methyl}cyclohexanecarboxylic acid(Non-covalent)

E2M.1: 19 residues within 4Å: Chain A: L.8, F.10, F.29, V.33, Y.42, I.111, Y.133, I.134, I.135, E.160, F.161, V.162, K.163, L.174, E.177, L.178, K.181 Chain B: V.184, I.185 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.111, A:Y.133, A:Y.133, A:Y.133, A:I.135, A:K.163, A:K.181, B:I.185 pi-Stacking: A:Y.133 E2M.2: 18 residues within 4Å: Chain A: V.184, I.185 Chain B: L.8, F.10, F.29, V.33, Y.42, I.111, I.131, Y.133, I.134, I.135, E.160, F.161, K.163, L.174, E.177, L.178 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.111, B:Y.133, B:Y.133, B:Y.133, B:I.135, B:K.163, B:K.163, B:E.177, B:L.178, A:V.184, A:I.185 Hydrogen bonds: B:Y.42, B:E.160, B:E.160 Water bridges: B:Y.133, B:Y.133 pi-Stacking: B:Y.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, E.Y. et al., Structure-activity relationship of ortho- and meta-phenol based LFA-1 ICAM inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-08-19

Peptides

Integrin alpha-L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrin alpha-L

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