- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 30 residues within 4Å:- Chain A: D.285, A.286, V.317, Q.319, Y.321, V.348, K.349, G.350, A.351, Y.352, W.353, Y.371, T.372, R.373, K.374, T.377, D.378, A.400, T.401, H.402, N.403, Q.426, C.427, L.428, S.455, E.474, T.479, S.480, F.481
- Ligands: PRO.1
30 PLIP interactions:28 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:A.400, A:Q.426, A:L.428
- Hydrogen bonds: A:A.286, A:A.286, A:Q.319, A:K.349, A:G.350, A:G.350, A:G.350, A:A.351, A:T.372, A:D.378, A:T.401, A:T.401, A:H.402, A:N.403, A:N.403, A:T.479, A:F.481
- Water bridges: A:N.283, A:K.374, A:V.482, P.1, P.1
- Salt bridges: A:K.349, A:K.349, A:K.374
- pi-Stacking: A:W.353, A:W.353
FAD.6: 30 residues within 4Å:- Chain B: D.285, A.286, V.317, Q.319, Y.321, V.348, K.349, G.350, A.351, Y.352, W.353, Y.371, T.372, R.373, K.374, T.377, D.378, A.400, T.401, H.402, N.403, Q.426, C.427, L.428, S.455, E.474, T.479, S.480, F.481
- Ligands: PRO.5
30 PLIP interactions:28 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:A.400, B:Q.426, B:L.428
- Hydrogen bonds: B:A.286, B:A.286, B:Q.319, B:K.349, B:G.350, B:G.350, B:G.350, B:A.351, B:T.372, B:D.378, B:T.401, B:T.401, B:H.402, B:N.403, B:N.403, B:T.479, B:F.481
- Water bridges: B:N.283, B:K.374, B:V.482, P.5, P.5
- Salt bridges: B:K.349, B:K.349, B:K.374
- pi-Stacking: B:W.353, B:W.353
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.3: 9 residues within 4Å:- Chain A: L.169, M.170, F.174, L.472, N.475, V.482
- Chain B: R.59, E.85, R.89
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.59, B:R.59, A:L.169, A:N.475
- Water bridges: A:Q.173, A:Q.173
1PE.4: 3 residues within 4Å:- Chain A: L.389, P.392, L.413
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.422
1PE.7: 9 residues within 4Å:- Chain A: R.59, E.85, R.89
- Chain B: L.169, M.170, F.174, L.472, N.475, V.482
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.169, B:N.475, A:R.59, A:R.59
- Water bridges: B:Q.173, B:Q.173
1PE.8: 3 residues within 4Å:- Chain B: L.389, P.392, L.413
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.422
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ostrander, E.L. et al., A conserved active site tyrosine residue of proline dehydrogenase helps enforce the preference for proline over hydroxyproline as the substrate. Biochemistry (2009)
- Release Date
- 2009-02-03
- Peptides
- Proline dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ostrander, E.L. et al., A conserved active site tyrosine residue of proline dehydrogenase helps enforce the preference for proline over hydroxyproline as the substrate. Biochemistry (2009)
- Release Date
- 2009-02-03
- Peptides
- Proline dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A