SMTL ID : 3e3u.1

Crystal structure of Mycobacterium tuberculosis peptide deformylase in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.56, C.106, H.148, H.152 Ligands: NVC.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.106, A:H.148, A:H.152

3 x NVC: N-[(2R)-2-{[(2S)-2-(1,3-benzoxazol-2-yl)pyrrolidin-1-yl]carbonyl}hexyl]-N-hydroxyformamide(Non-covalent)

NVC.2: 16 residues within 4Å: Chain A: N.48, G.49, V.50, G.51, Q.56, G.105, C.106, L.107, L.141, R.144, M.145, H.148, E.149, H.152, F.195 Ligands: NI.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.50, A:V.50, A:L.141, A:R.144, A:F.195, A:F.195 Hydrogen bonds: A:V.50, A:Q.56, A:L.107 NVC.3: 6 residues within 4Å: Chain A: A.2, V.4, P.5, Q.35, T.39, I.57 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.4 Hydrogen bonds: A:Q.35, A:T.39, A:T.39 Water bridges: A:L.36, A:T.39 NVC.4: 6 residues within 4Å: Chain A: V.13, T.16, T.19, G.58, C.59, S.60 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.13, A:T.16 Hydrogen bonds: A:S.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pichota, A. et al., Peptide deformylase inhibitors of Mycobacterium tuberculosis: synthesis, structural investigations, and biological results. Bioorg.Med.Chem.Lett. (2008)

Release Date

2009-01-20

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase