SMTL ID : 3e3x.1

The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.34, G.89, E.90, E.128, S.172, L.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.90, A:E.128, A:L.175 Water bridges: A:L.91 EDO.2: 6 residues within 4Å: Chain A: N.57, E.60, R.61, F.105 Chain B: K.51, F.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.60, A:E.60, A:R.61 EDO.4: 6 residues within 4Å: Chain B: V.34, G.89, E.90, E.128, S.172, L.175 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.90, B:E.90, B:E.128, B:L.175 Water bridges: B:L.91 EDO.5: 6 residues within 4Å: Chain A: K.51, F.52 Chain B: N.57, E.60, R.61, F.105 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.60, B:R.61

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: E.49, G.50, K.51, G.104, P.309 No protein-ligand interaction detected (PLIP) SO4.6: 5 residues within 4Å: Chain B: E.49, G.50, K.51, G.104, P.309 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633. To be Published

Release Date

2008-09-30

Peptides

BipA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BipA